COReD Clinical Omics Resource for Respiratory-virus host factor Evidence and Discovery

sklrd Logo
Home
Evidence Matrix
Gene Search
Clinical scRNA-seq Host Genetics(GWAS) Cell-line Perturbation Animal Models
Cell Search
Clinical scRNA-seq Animal Models
Custom Analysis
Browse
Clinical scRNA-seq Host Genetics(GWAS) Perturbation Screens Animal Models
Downloads About Help

Data Download

Evidence Matrix

Download the host-factor evidence matrix used by the Evidence Matrix page. The exported files contain one row per unique gene.

Download Evidence Matrix JSON Download Evidence Matrix CSV
COReD will be maintained under the current URL for at least five years. Evidence indices and downloadable metadata will be updated as new respiratory-virus host-factor datasets become available.

Source Studies and Metadata

85source records
GEO / ENA / ArrayExpresssource accessions
PubMed-linkedpublication metadata
Download metadata workbook Download metadata CSV

External links open GEO, BioProject, ArrayExpress or PubMed records when available.

Accession PubMed Species Data type Virus Tissue Control Mild Moderate Severe Recovery Infected
GSE206289 PMID: 40379618 Homo_sapiens scRNA-seq COVID-19 PBMC 14 26
GSE206284 PMID: 35810186 Homo_sapiens scRNA-seq COVID-19 pbmc 5 36
GSE200896 PMID: 35783607 Homo_sapiens scRNA-seq COVID-19 pbmc 5
GSE197440 PMID: 36174229 Homo_sapiens scRNA-seq COVID-19 BALF 4
GSE196456 PMID: 36539107 Homo_sapiens scRNA-seq COVID-19 PBMC 28
GSE193782 PMID: 35820705 Homo_sapiens scRNA-seq COVID-19 BALF 4
GSE192391 PMID: 35169146 Homo_sapiens scRNA-seq COVID-19 PBMC 30
GSE188172 PMID: 36941461 Homo_sapiens scRNA-seq COVID-19 PBMC 12 159
GSE183974 PMID: 35522264 Homo_sapiens scRNA-seq COVID-19 BALF 6
GSE182123 PMID: 36229591 Homo_sapiens scRNA-seq COVID-19 PBMC 3
GSE180578 PMID: 34873589 Homo_sapiens scRNA-seq COVID-19 PBMC 10 24
GSE178404 PMID: 34529726 Homo_sapiens scRNA-seq COVID-19 PBMC 12
GSE178404 PMID: 34529726 Homo_sapiens scRNA-seq Flu PBMC 12
GSE175450 PMID: 35032429 Homo_sapiens scRNA-seq COVID-19 PBMC 6 12 11
GSE175450 PMID: 35032429 Homo_sapiens scRNA-seq Flu PBMC 8
GSE174725 PMID: 36131930 Homo_sapiens scRNA-seq COVID-19 BALF
GSE173590 PMID: 39122670 Homo_sapiens scRNA-seq COVID-19 pbmc 23 70
GSE171668 PMID: 33915569 Homo_sapiens sn-seq COVID-19 Lung-Autopsy 24 47
GSE171668 PMID: 33915569 Homo_sapiens sn-seq COVID-19 Airway 4
GSE171668 PMID: 33915569 Homo_sapiens sn-seq COVID-19 trachea 4
GSE171555 PMID: 33870241 Homo_sapiens scRNA-seq COVID-19 PBMC 48
GSE171524 PMID: 33915568 Homo_sapiens snRNA-seq COVID-19 Lung-Autopsy 7 19
GSE171052 PMID: 36911724 Homo_sapiens scRNA-seq COVID-19 PBMC 3
GSE168215 PMID: 34937051 Homo_sapiens scRNA-seq COVID-19 Bronchial brushing 9
GSE167232 PMID: 34292313 Homo_sapiens scRNA-seq COVID-19 BALF 2
GSE167030 PMID: 34414385 Homo_sapiens scRNA-seq COVID-19 pbmc 18
GSE166992 PMID: 33691089 Homo_sapiens scRNA-seq COVID-19 PBMC 3 6
GSE165182 NA Homo_sapiens scRNA-seq COVID-19 PBMC 2 16
GSE163668 PMID: 33494096 Homo_sapiens scRNA-seq COVID-19 PBMC 13
GSE162864 PMID: 34354210 Homo_sapiens snRNA-seq Flu nasal mucosa 21 2
GSE161918 PMID: 33713619 Homo_sapiens scRNA-seq COVID-19 PBMC
GSE159585 PMID: 35998078 Homo_sapiens COVID-19 lung 12 7
GSE158127 PMID: 33257409 Homo_sapiens scRNA-seq COVID-19 Lung transplant 10 12
GSE158055 PMID: 33657410 Homo_sapiens scRNA-seq COVID-19 PBMC 20 70 94
GSE158055 PMID: 33657410 Homo_sapiens scRNA-seq COVID-19 Sputum 5 17
GSE158038 PMID: 33785765 Homo_sapiens scRNA-seq COVID-19 BALF 3
GSE157789 PMID: 34782790 Homo_sapiens scRNA-seq COVID-19 PBMC 5 21
GSE157344 PMID: 33674591 Homo_sapiens scRNA-seq COVID-19 BALF 21
GSE157344 NA Homo_sapiens scRNA-seq COVID-19 PBMC 6 7 20
GSE155224 PMID: 35064122 Homo_sapiens scRNA-seq COVID-19 PBMC 24
PMID: 34003804 Homo_sapiens scRNA-seq COVID-19 nasal swab 3 6
GSE154567 PMID: 33357411 Homo_sapiens scRNA-seq COVID-19 PBMC 3 3 3
GSE151928 PMID: 33079572 Homo_sapiens scRNA-seq HC BALF 15
GSE150861 PMID: 32764665 Homo_sapiens scRNA-seq COVID-19 PBMC 7
GSE149878 PMID: 33252859 Homo_sapiens scRNA-seq COVID-19 Lung-Biopsy 4
GSE149689 PMID: 32651212 Homo_sapiens scRNA-seq COVID-19 PBMC 4 4 6 1
GSE149689 PMID: 36229591 Homo_sapiens scRNA-seq Flu PBMC 5
GSE148829 PMID: 32413319 Homo_sapiens scRNA-seq HC inferior turbinate scrapings 2
GSE147143 PMID: 32671793 Homo_sapiens scRNA-seq COVID-19 BALF 3
GSE146943 NA Homo_sapiens scRNA-seq COVID-19 ̵ 2 2
GSE146943 NA Homo_sapiens scRNA-seq COVID-19 PBMC 1
GSE145926 PMID: 32398875 Homo_sapiens scRNA-seq COVID-19 BALF 3 3 6
GSE145360 PMID: 32603604 Homo_sapiens scRNA-seq HC ̵ 5
GSE136831 PMID: 32832599 Homo_sapiens scRNA-seq HC Lung-Biopsy 28
GSE134355 PMID: 32214235 Homo_sapiens scRNA-seq HC Lung-Biopsy 8
GSE130148 PMID: 31209336 Homo_sapiens scRNA-seq HC Lung 4
GSE128169 PMID: 31405848 Homo_sapiens scRNA-seq HC Lung 6
GSE128033 PMID: 31221805 Homo_sapiens scRNA-seq HC Lung-Biopsy 8
GSE128033 PMID: 31221805 Homo_sapiens scRNA-seq HC BALF 2
GSE122960 PMID: 30554520 Homo_sapiens scRNA-seq HC Lung-Biopsy 8
GSE233522 PMID: 39288992 Homo_sapiens scRNA-seq COVID-19 pbmc 3
GSE232623 PMID: 39367123 Homo_sapiens scRNA-seq COVID-19 Nasal epithelium 8
GSE230227 PMID: 37146127 Homo_sapiens scRNA-seq COVID-19 pbmc 4
GSE243629 PMID: 38089584 Homo_sapiens scRNA-seq Flu PBMC 4 7
GSE239452 PMID: 39504241 Homo_sapiens scRNA-seq COVID-19 pbmc 3 23
GSE236177 PMID: 37606044 Homo_sapiens scRNA-seq COVID-19 PBMC 3 38
GSE264196 NA Homo_sapiens scRNA-seq COVID-19 pbmc 4 10
GSE263817 PMID: 39018367 Homo_sapiens scRNA-seq COVID-19 balf/pbmc 2 9
GSE262861 PMID: 38632311 Homo_sapiens scRNA-seq COVID-19 PBMC 10 10
GSE248669 PMID: 39536392 Homo_sapiens scRNA-seq COVID-19 PBMC 16
GSE248556 PMID: 39835127 Homo_sapiens scRNA-seq COVID-19 pbmc 9
GSE247906 PMID: 38213787 Homo_sapiens scRNA-seq COVID-19 PBMC 9 5
GSE247917 PMID: 38213787 Homo_sapiens scRNA-seq COVID-19 pbmc 9 5
GSE212584 PMID: 36597549 Homo_sapiens scRNA-seq COVID-19 PBMC 15
GSE216488 PMID: 36736301 Homo_sapiens CITEseq COVID-19 PBMC
GSE293707 PMID: 35064122 Homo_sapiens scRNA-seq COVID-19 pbmc 1 1 2
GSE287808 PMID: 39890933 Homo_sapiens scRNA-seq COVID-19 pbmc 5 11
GSE287808 PMID: 39890933 Homo_sapiens scRNA-seq COVID-19 nasal 6 12
GSE270479 PMID: 39536117 Homo_sapiens scRNA-seq COVID-19 pbmc 14
E-MTAB-12392 PMID: 36445762 scRNA-seq SARS-CoV-3 PBMC 18
E-MTAB-10129 PMID: 35216672 scRNA-seq SARS-CoV-4 PBMC 16 17 13
E-MTAB-10026 PMID: 33879890 scRNA-seq SARS-CoV-2 PBMC 24 70
GSE176269 PMID: 34618691 scRNA-seq SARS-CoV-2 Nose 28 32
GSE176269 PMID: 34618691 scRNA-seq FluA Nose 56
GSE160673 PMID: 33321047 Homo_sapiens scRNA-seq HC Bronchial brushing 12
Loading source records...